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Biological Classification NCERT Revision by Sidd Sir

/ Biological Classification, NCERT LINE BY LINE / By Prof. Siddharth Sanghvi

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Interactive Notes: Biological Classification

Biological Classification

Understanding the Diversity of Life

The Need for Classification

Since the dawn of civilization, humans have attempted to classify living organisms. Early classifications were instinctive, based on immediate needs for food, shelter, and clothing. Aristotle provided an early scientific basis, classifying plants into trees, shrubs, and herbs, and animals based on the presence or absence of red blood.

Linnaeus proposed a Two Kingdom system (Plantae and Animalia). However, this system failed to differentiate between prokaryotes and eukaryotes, unicellular and multicellular organisms, and photosynthetic and non-photosynthetic organisms. As our understanding of life’s characteristics (cell structure, nutrition, reproduction, evolutionary relationships) improved, classification systems evolved.

R.H. Whittaker’s Five Kingdom Classification (1969)

R.H. Whittaker proposed a widely accepted Five Kingdom Classification, naming the kingdoms as Monera, Protista, Fungi, Plantae, and Animalia. The primary criteria used for this classification include:

  • Cell structure (prokaryotic/eukaryotic)
  • Body organisation (unicellular/multicellular)
  • Mode of nutrition (autotrophic/heterotrophic)
  • Reproduction (sexual/asexual)
  • Phylogenetic relationships (evolutionary history)

Characteristics of the Five Kingdoms (Table 2.1)

Characters Monera Protista Fungi Plantae Animalia
Cell type Prokaryotic Eukaryotic Eukaryotic Eukaryotic Eukaryotic
Cell wall Noncellulosic (Polysaccharide + amino acid) Present in some Present (with chitin) Present (cellulose) Absent
Nuclear membrane Absent Present Present Present Present
Body organisation Cellular Cellular Multicellular/loose tissue Tissue/Organ Tissue/Organ/Organ system
Mode of nutrition Autotrophic (chemosynthetic & photosynthetic) and Heterotrophic (saprophytic/parasitic) Autotrophic (Photosynthetic) and Heterotrophic Heterotrophic (Saprophytic/Parasitic) Autotrophic (Photosynthetic) Heterotrophic (Holozoic/Saprophytic etc.)

The three-domain system, dividing Monera into two domains, leading to a six-kingdom classification, is also proposed.

NEET/JEE Practice Question:

Which criterion was NOT used by R.H. Whittaker for the five kingdom classification?

  • (a) Cell structure
  • (b) Body organisation
  • (c) Habitat
  • (d) Mode of nutrition

Correct Answer: (c) Habitat

Explanation: Whittaker’s criteria included cell structure, body organisation, mode of nutrition, reproduction, and phylogenetic relationships, but not habitat directly as a primary criterion for kingdom demarcation.

2.1 Kingdom Monera

Bacteria are the sole members of Kingdom Monera, being the most abundant microorganisms found almost everywhere, even in extreme habitats. Many also live as parasites.

Bacterial Shapes (Figure 2.1)

  • Coccus (pl.: cocci): Spherical
  • Bacillus (pl.: bacilli): Rod-shaped
  • Vibrium (pl.: vibrio): Comma-shaped
  • Spirillum (pl.: spirilla): Spiral
Bacterial Shapes

Conceptual diagram representing different bacterial shapes: Cocci, Bacilli, Spirilla, Vibrio.

Bacteria show extensive metabolic diversity, with some being autotrophic (photosynthetic or chemosynthetic) and the vast majority being heterotrophic (decomposers, saprophytic, or parasitic).

2.1.1 Archaebacteria

  • Live in harsh habitats: halophiles (extreme salty), thermoacidophiles (hot springs), methanogens (marshy areas).
  • Differ from other bacteria by a unique cell wall structure, aiding survival in extreme conditions.
  • Methanogens produce methane (biogas) from dung of ruminant animals.

2.1.2 Eubacteria (‘True Bacteria’)

  • Characterised by a rigid cell wall and a flagellum (if motile).
  • Cyanobacteria (Blue-green algae): Photosynthetic autotrophs with chlorophyll ‘a’. Unicellular, colonial, or filamentous; form blooms in polluted water. Some (Nostoc, Anabaena) fix atmospheric nitrogen in heterocysts (Figure 2.2).
  • Chemosynthetic autotrophic bacteria: Oxidise inorganic substances (nitrates, nitrites, ammonia) for ATP production. Important in nutrient recycling (N, P, Fe, S).
  • Heterotrophic bacteria: Most abundant in nature, important decomposers. Many are beneficial (curd production, antibiotics, nitrogen fixation in legumes) but some are pathogens (causing cholera, typhoid, tetanus, citrus canker).
Filamentous Blue-green Algae - Nostoc

Conceptual diagram of a filamentous blue-green alga – Nostoc (Figure 2.2).

Bacteria primarily reproduce by fission (Figure 2.3). Under unfavourable conditions, they form spores. Primitive DNA transfer (sexual reproduction) also occurs.

Dividing Bacterium

Conceptual diagram of a dividing bacterium (Figure 2.3).

Mycoplasma: Organisms completely lacking a cell wall. Smallest known living cells, can survive without oxygen. Many are pathogenic.

NEET/JEE Practice Question:

Which of the following statements about Archaebacteria is INCORRECT?

  • (a) They live in some of the most harsh habitats.
  • (b) Their cell wall structure is different from other bacteria.
  • (c) Methanogens are found in the gut of ruminant animals.
  • (d) They possess chlorophyll ‘a’ and are photosynthetic autotrophs.

Correct Answer: (d) They possess chlorophyll ‘a’ and are photosynthetic autotrophs.

Explanation: Cyanobacteria (a type of Eubacteria) possess chlorophyll ‘a’ and are photosynthetic autotrophs, not Archaebacteria. Archaebacteria’s unique cell wall helps them survive in extreme conditions but doesn’t involve chlorophyll ‘a’ for photosynthesis.

2.2 Kingdom Protista

Kingdom Protista includes all single-celled eukaryotes. The boundaries of this kingdom are not well defined, leading to some debate on what organisms to include. Members are primarily aquatic, and this kingdom links plants, animals, and fungi.

Protistan cells have a well-defined nucleus and other membrane-bound organelles. Some possess flagella or cilia. Reproduction occurs both asexually and sexually (involving cell fusion and zygote formation).

2.2.1 Chrysophytes

  • Includes diatoms and golden algae (desmids).
  • Found in fresh and marine water, microscopic, float passively (plankton). Most are photosynthetic.
  • Diatoms have cell walls forming two thin, overlapping shells embedded with silica, making them indestructible. Accumulation forms ‘diatomaceous earth’, used in polishing, filtration.
  • Diatoms are the chief ‘producers’ in the oceans.

2.2.2 Dinoflagellates

  • Mostly marine and photosynthetic. Appear yellow, green, brown, blue or red due to main pigments.
  • Cell wall has stiff cellulose plates on the outer surface. Most have two flagella (one longitudinal, one transverse in a furrow).
  • Red dinoflagellates (e.g., *Gonyaulax*) undergo rapid multiplication causing ‘red tides’. Toxins released can kill marine animals.

2.2.3 Euglenoids

  • Majority are fresh water organisms in stagnant water.
  • Lack a cell wall; have a protein-rich layer called pellicle, making their body flexible.
  • Have two flagella (short and long). Photosynthetic in sunlight, but behave heterotrophically by predating in sunlight deprivation.
  • Pigments are identical to those in higher plants. Example: *Euglena* (Figure 2.4b).

2.2.4 Slime Moulds

  • Saprophytic protists. Move along decaying twigs and leaves, engulfing organic material.
  • Under suitable conditions, form an aggregation called plasmodium, which can grow extensively.
  • Under unfavourable conditions, plasmodium differentiates into fruiting bodies bearing spores. Spores have true walls, are resistant, and dispersed by air currents.

2.2.5 Protozoans

All protozoans are heterotrophs (predators or parasites), considered primitive relatives of animals. Four major groups:

  • Amoeboid protozoans: Live in fresh/sea water or moist soil. Move and capture prey using pseudopodia (false feet), like *Amoeba*. Marine forms have silica shells. Some are parasites (e.g., *Entamoeba*).
  • Flagellated protozoans: Free-living or parasitic. Have flagella. Parasitic forms cause diseases like sleeping sickness (e.g., *Trypanosoma*).
  • Ciliated protozoans: Aquatic, actively moving due to thousands of cilia. Have a gullet for steering food. Example: *Paramoecium* (Figure 2.4d).
  • Sporozoans: Diverse organisms with an infectious spore-like stage in their life cycle. Example: *Plasmodium* (malarial parasite).
Diversity of Protists

Conceptual diagrams illustrating diverse protists: Dinoflagellates, Euglena, Slime mould, Paramoecium (Figure 2.4).

NEET/JEE Practice Question:

Which of the following protists is characterized by the presence of a pellicle instead of a cell wall?

  • (a) Diatoms
  • (b) Dinoflagellates
  • (c) Euglenoids
  • (d) Slime moulds

Correct Answer: (c) Euglenoids

Explanation: Euglenoids are unique among protists in having a flexible pellicle (protein-rich layer) instead of a rigid cell wall, contributing to their body flexibility.

2.3 Kingdom Fungi

Fungi constitute a unique kingdom of heterotrophic organisms, showing great diversity in morphology and habitat. They are cosmopolitan, preferring warm and humid places.

Most fungi are filamentous, consisting of long, slender, thread-like structures called hyphae, which form a network called mycelium. Some hyphae are coenocytic (continuous tubes with multinucleated cytoplasm) while others are septate (with cross walls). Their cell walls are composed of chitin and polysaccharides.

Most fungi are saprophytes (absorb soluble organic matter from dead substrates). Some are parasites (depend on living plants/animals). They can also live as symbionts (e.g., lichens with algae, mycorrhiza with plant roots).

Reproduction in Fungi

  • Vegetative means: Fragmentation, fission, and budding.
  • Asexual reproduction: By spores called conidia, sporangiospores, or zoospores, produced in fruiting bodies.
  • Sexual reproduction: By oospores, ascospores, and basidiospores, also produced in distinct fruiting bodies.

Sexual Cycle Steps:

  1. Plasmogamy: Fusion of protoplasms between two motile or non-motile gametes.
  2. Karyogamy: Fusion of two nuclei.
  3. Meiosis: In zygote, resulting in haploid spores.

In some fungi, plasmogamy immediately leads to diploid cells. In Ascomycetes and Basidiomycetes, an intervening dikaryotic stage ($n+n$) occurs before karyogamy.

Classes of Kingdom Fungi

Classification into classes is based on morphology of mycelium, mode of spore formation, and fruiting bodies.

  • 2.3.1 Phycomycetes:
    • Found in aquatic habitats, decaying wood, damp places, or as obligate parasites on plants.
    • Mycelium is aseptate and coenocytic.
    • Asexual reproduction by zoospores (motile) or aplanospores (non-motile), endogenously produced.
    • Zygospore formed by fusion of isogamous (similar) or anisogamous/oogamous (dissimilar) gametes.
    • Examples: *Mucor* (Figure 2.5a), *Rhizopus* (bread mould), *Albugo* (on mustard).
  • 2.3.2 Ascomycetes (‘Sac-fungi’):
    • Mostly multicellular (e.g., *Penicillium*), rarely unicellular (e.g., yeast, *Saccharomyces*).
    • Saprophytic, decomposers, parasitic, or coprophilous (dung-growing).
    • Mycelium is branched and septate.
    • Asexual spores: Conidia, produced exogenously on conidiophores.
    • Sexual spores: Ascospores, produced endogenously in sac-like asci. Asci arranged in ascocarps.
    • Examples: *Aspergillus* (Figure 2.5b), *Claviceps*, *Neurospora* (used in biochemical/genetic work). Some are edible (morels, truffles).
  • 2.3.3 Basidiomycetes (Mushrooms, Bracket fungi, Puffballs):
    • Grow in soil, on logs/tree stumps, or as parasites (rusts, smuts).
    • Mycelium is branched and septate.
    • Asexual spores generally absent; vegetative reproduction by fragmentation is common.
    • Sex organs absent; plasmogamy by fusion of vegetative/somatic cells. Leads to dikaryotic structure, ultimately forming basidium.
    • Karyogamy and meiosis in basidium produce four basidiospores, produced exogenously on basidia, arranged in basidiocarps.
    • Examples: *Agaricus* (mushroom) (Figure 2.5c), *Ustilago* (smut), *Puccinia* (rust fungus).
  • 2.3.4 Deuteromycetes (‘Imperfect Fungi’):
    • Known only by asexual or vegetative phases. Sexual forms, if discovered, lead to reclassification into Ascomycetes or Basidiomycetes.
    • Reproduce only by asexual spores (conidia). Mycelium is septate and branched.
    • Saprophytes or parasites; many are decomposers of litter, helping mineral cycling.
    • Examples: *Alternaria*, *Colletotrichum*, *Trichoderma*.
Diversity of Fungi

Conceptual diagrams illustrating diverse fungi: Mucor, Aspergillus, Agaricus (Figure 2.5).

NEET/JEE Practice Question:

Which class of fungi is commonly known as ‘sac-fungi’ and includes unicellular members like yeast?

  • (a) Phycomycetes
  • (b) Ascomycetes
  • (c) Basidiomycetes
  • (d) Deuteromycetes

Correct Answer: (b) Ascomycetes

Explanation: Ascomycetes are known as sac-fungi due to their sac-like asci. They are mostly multicellular but include unicellular forms like yeast.

2.4 Kingdom Plantae & 2.5 Kingdom Animalia

2.4 Kingdom Plantae

  • Includes all eukaryotic, chlorophyll-containing organisms.
  • Most are autotrophic (photosynthetic), but a few are partially heterotrophic (insectivorous plants like Bladderwort, Venus fly trap) or parasites (e.g., *Cuscuta*).
  • Plant cells have eukaryotic structure with prominent chloroplasts and a cell wall mainly made of cellulose.
  • Includes algae, bryophytes, pteridophytes, gymnosperms, and angiosperms.
  • Life cycle exhibits alternation of generations: diploid sporophytic and haploid gametophytic phases alternate.

2.5 Kingdom Animalia

  • Characterized by heterotrophic, eukaryotic, multicellular organisms that *lack* cell walls.
  • Directly or indirectly depend on plants for food.
  • Digest food in an internal cavity and store reserves as glycogen or fat.
  • Mode of nutrition is holozoic (by ingestion of food).
  • Follow a definite growth pattern, growing into adults with definite shape and size.
  • Higher forms show elaborate sensory and neuromotor mechanisms. Most are capable of locomotion.
  • Sexual reproduction by copulation of male and female, followed by embryological development.

2.6 Viruses, Viroids, Prions and Lichens

Whittaker’s five-kingdom classification did not include acellular organisms like viruses, viroids, and prions, nor composite organisms like lichens. These are distinct biological entities.

Viruses

  • Non-cellular organisms; not considered truly ‘living’ outside a host cell due to inert crystalline structure.
  • Obligate parasites: Take over host cell machinery to replicate, killing the host.
  • Dmitri Ivanowsky (1892): Recognized microbes smaller than bacteria causing tobacco mosaic disease.
  • M.W. Beijerinck (1898): Named the pathogen “virus” and fluid as “Contagium vivum fluidum” (infectious living fluid).
  • W.M. Stanley (1935): Showed viruses could be crystallized; crystals largely consist of proteins.
  • Structure: Nucleoprotein (genetic material + protein coat). Genetic material is infectious.
  • Genetic Material: Can be either RNA or DNA, but NEVER both.
    • Plant viruses: Usually single-stranded RNA.
    • Animal viruses: Single or double-stranded RNA, or double-stranded DNA.
    • Bacteriophages (infect bacteria): Usually double-stranded DNA viruses.
  • Protein Coat: Called capsid, made of small subunits called capsomeres, arranged helically or polyhedrally.
  • Diseases: Mumps, smallpox, herpes, influenza, AIDS (in humans). In plants: mosaic formation, leaf rolling/curling, yellowing, dwarfing, stunted growth.
Tobacco Mosaic Virus (TMV) and Bacteriophage

Conceptual diagrams of Tobacco Mosaic Virus (TMV) and a Bacteriophage (Figure 2.6).

Viroids & Prions

Viroids:

  • T.O. Diener (1971): Discovered infectious agent smaller than viruses, causing potato spindle tuber disease.
  • Consist of free RNA; lack protein coat found in viruses. RNA is of low molecular weight.

Prions:

  • Infectious neurological agents consisting of abnormally folded protein. Similar in size to viruses.
  • Cause diseases like Bovine Spongiform Encephalopathy (BSE – mad cow disease) in cattle and Creutzfeldt-Jacob disease (CJD) in humans.

Lichens

  • Symbiotic associations: Mutually useful relationship between algae and fungi.
  • Algal component: Phycobiont (autotrophic, prepares food for fungi).
  • Fungal component: Mycobiont (heterotrophic, provides shelter and absorbs mineral nutrients/water for algae).
  • Association is so close that they appear as single organisms.
  • Good pollution indicators: Do not grow in polluted areas.

NEET/JEE Practice Question:

How are viroids different from viruses?

  • (a) Viroids have DNA, viruses have RNA.
  • (b) Viroids lack a protein coat, while viruses have one.
  • (c) Viroids replicate inside host cells, viruses do not.
  • (d) Viroids are larger than viruses.

Correct Answer: (b) Viroids lack a protein coat, while viruses have one.

Explanation: Viroids are infectious RNA molecules without a protein coat, whereas viruses are nucleoprotein entities (genetic material + capsid protein coat). Both replicate inside host cells.

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